libSBML Perl API
libSBML 5.12.0 Perl API
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- g -
GeneAssociation() :
GeneAssociation
GeneProduct() :
GeneProduct
GeneProductAssociation() :
GeneProductAssociation
GeneProductRef() :
GeneProductRef
GeneralGlyph() :
GeneralGlyph
get() :
List
,
ListOf
,
ListOfCompartmentGlyphs
,
ListOfCompartments
,
ListOfCompartmentTypes
,
ListOfConstraints
,
ListOfDeletions
,
ListOfEventAssignments
,
ListOfEvents
,
ListOfExternalModelDefinitions
,
ListOfFbcAssociations
,
ListOfFluxBounds
,
ListOfFluxObjectives
,
ListOfFunctionDefinitions
,
ListOfFunctionTerms
,
ListOfGeneAssociations
,
ListOfGeneProducts
,
ListOfGraphicalObjects
,
ListOfInitialAssignments
,
ListOfInputs
,
ListOfLayouts
,
ListOfLineSegments
,
ListOfLocalParameters
,
ListOfModelDefinitions
,
ListOfObjectives
,
ListOfOutputs
,
ListOfParameters
,
ListOfPorts
,
ListOfQualitativeSpecies
,
ListOfReactionGlyphs
,
ListOfReactions
,
ListOfReferenceGlyphs
,
ListOfReplacedElements
,
ListOfRules
,
ListOfSpecies
,
ListOfSpeciesGlyphs
,
ListOfSpeciesReferenceGlyphs
,
ListOfSpeciesReferences
,
ListOfSpeciesTypes
,
ListOfSubmodels
,
ListOfTextGlyphs
,
ListOfTransitions
,
ListOfUnitDefinitions
,
ListOfUnits
getActiveObjective() :
FbcModelPlugin
,
ListOfObjectives
getActiveObjectiveId() :
FbcModelPlugin
getAddDefaultUnits() :
SBMLLevelVersionConverter
getAdditionalGraphicalObject() :
Layout
getAllElements() :
BoundingBox
,
CompModelPlugin
,
CompSBasePlugin
,
CompSBMLDocumentPlugin
,
CubicBezier
,
Curve
,
Event
,
FbcAnd
,
FbcModelPlugin
,
FbcOr
,
FbcReactionPlugin
,
FbcSpeciesPlugin
,
GeneProductAssociation
,
GeneralGlyph
,
GraphicalObject
,
KineticLaw
,
Layout
,
LayoutModelPlugin
,
LineSegment
,
ListOf
,
ListOfFunctionTerms
,
Model
,
Objective
,
QualModelPlugin
,
Reaction
,
ReactionGlyph
,
ReferenceGlyph
,
SBase
,
SBasePlugin
,
SBaseRef
,
SBMLDocument
,
SpeciesReferenceGlyph
,
Submodel
,
Transition
,
UnitDefinition
getAllElementsFromPlugins() :
SBase
getAllInstantiatedElements() :
Submodel
getAllRegisteredPackageNames() :
SBMLExtensionRegistry
getAncestorOfType() :
SBase
getAnnotation() :
SBase
getAnnotationString() :
SBase
getApplicableValidators() :
SBMLInternalValidator
getAreaUnits() :
Model
getArgument() :
FunctionDefinition
getAssignmentRule() :
Model
getAssignmentRuleByVariable() :
Model
getAssociatedSpecies() :
GeneProduct
getAssociation() :
FbcAnd
,
FbcOr
,
GeneAssociation
,
GeneProductAssociation
getAttributes() :
XMLToken
getAttributesLength() :
XMLToken
getAttrIndex() :
XMLToken
getAttrName() :
XMLToken
getAttrPrefix() :
XMLToken
getAttrPrefixedName() :
XMLToken
getAttrURI() :
XMLToken
getAttrValue() :
XMLToken
getBasePoint1() :
CubicBezier
getBasePoint2() :
CubicBezier
getBiologicalQualifierType() :
CVTerm
getBody() :
FunctionDefinition
getBoolValue() :
ConversionOption
,
ConversionProperties
getBoundaryCondition() :
Species
getBoundingBox() :
GraphicalObject
getBoundingBoxExplicitlySet() :
GraphicalObject
getBySpecies() :
ListOfInputs
,
ListOfOutputs
getCategory() :
Validator
,
XMLError
getCategoryAsString() :
XMLError
getCharacter() :
ASTNode
getCharacters() :
XMLToken
getCharge() :
FbcSpeciesPlugin
,
Species
getChemicalFormula() :
FbcSpeciesPlugin
getChild() :
ASTNode
,
XMLNode
getClass() :
ASTNode
getCoefficient() :
FluxObjective
getColumn() :
SBase
,
XMLError
,
XMLToken
getComparisonCaseSensitivity() :
L3ParserSettings
getCompartment() :
Model
,
QualitativeSpecies
,
Reaction
,
Species
getCompartmentGlyph() :
Layout
getCompartmentId() :
CompartmentGlyph
getCompartmentType() :
Compartment
,
Model
getConstant() :
Compartment
,
Parameter
,
QualitativeSpecies
,
Species
,
SpeciesReference
getConstraint() :
Model
getConversionFactor() :
Model
,
ReplacedElement
,
Species
getConversionValidators() :
SBMLInternalValidator
getConverterByIndex() :
SBMLConverterRegistry
getConverterFor() :
SBMLConverterRegistry
getCreatedDate() :
ModelHistory
getCreator() :
ModelHistory
getCurve() :
GeneralGlyph
,
ReactionGlyph
,
ReferenceGlyph
,
SpeciesReferenceGlyph
getCurveExplicitlySet() :
GeneralGlyph
,
ReactionGlyph
,
ReferenceGlyph
,
SpeciesReferenceGlyph
getCurveSegment() :
Curve
getCVTerm() :
SBase
getCVTerms() :
SBase
getDateAsString() :
Date
getDay() :
Date
getDefaultLevel() :
CompExtension
,
FbcExtension
,
LayoutExtension
,
QualExtension
,
SBMLDocument
getDefaultPackageVersion() :
CompExtension
,
FbcExtension
,
LayoutExtension
,
QualExtension
getDefaultProperties() :
CobraToFbcConverter
,
CompFlatteningConverter
,
FbcToCobraConverter
,
FbcV1ToV2Converter
,
FbcV2ToV1Converter
,
SBMLConverter
,
SBMLFunctionDefinitionConverter
,
SBMLIdConverter
,
SBMLInferUnitsConverter
,
SBMLInitialAssignmentConverter
,
SBMLLevel1Version1Converter
,
SBMLLevelVersionConverter
,
SBMLLocalParameterConverter
,
SBMLReactionConverter
,
SBMLRuleConverter
,
SBMLStripPackageConverter
,
SBMLUnitsConverter
getDefaultTerm() :
ListOfFunctionTerms
,
Transition
getDefaultVersion() :
CompExtension
,
FbcExtension
,
LayoutExtension
,
QualExtension
,
SBMLDocument
getDefinitionURL() :
ASTNode
getDefinitionURLString() :
ASTNode
getDelay() :
Event
getDeletion() :
ReplacedElement
,
Submodel
getDenominator() :
ASTNode
,
SpeciesReference
getDepth() :
Dimensions
getDerivedUnitDefinition() :
Compartment
,
Delay
,
EventAssignment
,
InitialAssignment
,
KineticLaw
,
LocalParameter
,
Parameter
,
Rule
,
Species
,
StoichiometryMath
getDescription() :
ConversionOption
,
ConversionProperties
getDExplicitlySet() :
Dimensions
getDimensions() :
BoundingBox
,
Layout
getDimensionsExplicitlySet() :
BoundingBox
,
Layout
getDisabledPlugin() :
SBase
getDivider() :
CompModelPlugin
getDocument() :
SBMLConverter
,
SBMLValidator
getDoubleValue() :
ConversionOption
,
ConversionProperties
getElementByMetaId() :
CompModelPlugin
,
CompSBasePlugin
,
CompSBMLDocumentPlugin
,
Event
,
KineticLaw
,
ListOf
,
Model
,
Reaction
,
SBase
,
SBasePlugin
,
SBaseRef
,
SBMLDocument
,
Submodel
,
Transition
,
UnitDefinition
getElementBySId() :
CompModelPlugin
,
CompSBasePlugin
,
CompSBMLDocumentPlugin
,
Event
,
KineticLaw
,
ListOf
,
ListOfEventAssignments
,
ListOfInitialAssignments
,
ListOfLocalParameters
,
ListOfPorts
,
ListOfRules
,
ListOfUnitDefinitions
,
Model
,
Reaction
,
SBase
,
SBasePlugin
,
SBaseRef
,
SBMLDocument
,
Submodel
,
Transition
,
UnitDefinition
getElementName() :
Association
,
BoundingBox
,
Compartment
,
CompartmentGlyph
,
CompartmentType
,
Constraint
,
CubicBezier
,
Curve
,
DefaultTerm
,
Delay
,
Deletion
,
Dimensions
,
Event
,
EventAssignment
,
ExternalModelDefinition
,
FbcAnd
,
FbcAssociation
,
FbcOr
,
FluxBound
,
FluxObjective
,
FunctionDefinition
,
FunctionTerm
,
GeneAssociation
,
GeneProduct
,
GeneProductAssociation
,
GeneProductRef
,
GeneralGlyph
,
GraphicalObject
,
InitialAssignment
,
Input
,
KineticLaw
,
Layout
,
LineSegment
,
ListOf
,
ListOfCompartmentGlyphs
,
ListOfCompartments
,
ListOfCompartmentTypes
,
ListOfConstraints
,
ListOfDeletions
,
ListOfEventAssignments
,
ListOfEvents
,
ListOfExternalModelDefinitions
,
ListOfFbcAssociations
,
ListOfFluxBounds
,
ListOfFluxObjectives
,
ListOfFunctionDefinitions
,
ListOfFunctionTerms
,
ListOfGeneAssociations
,
ListOfGeneProducts
,
ListOfGraphicalObjects
,
ListOfInitialAssignments
,
ListOfInputs
,
ListOfLayouts
,
ListOfLineSegments
,
ListOfLocalParameters
,
ListOfModelDefinitions
,
ListOfObjectives
,
ListOfOutputs
,
ListOfParameters
,
ListOfPorts
,
ListOfQualitativeSpecies
,
ListOfReactionGlyphs
,
ListOfReactions
,
ListOfReferenceGlyphs
,
ListOfReplacedElements
,
ListOfRules
,
ListOfSpecies
,
ListOfSpeciesGlyphs
,
ListOfSpeciesReferenceGlyphs
,
ListOfSpeciesReferences
,
ListOfSpeciesTypes
,
ListOfSubmodels
,
ListOfTextGlyphs
,
ListOfTransitions
,
ListOfUnitDefinitions
,
ListOfUnits
,
LocalParameter
,
Model
,
ModelDefinition
,
ModifierSpeciesReference
,
Objective
,
Output
,
Parameter
,
Point
,
Port
,
Priority
,
QualitativeSpecies
,
Reaction
,
ReactionGlyph
,
ReferenceGlyph
,
ReplacedBy
,
ReplacedElement
,
Rule
,
SBase
,
SBaseExtensionPoint
,
SBaseRef
,
SBMLDocument
,
Species
,
SpeciesGlyph
,
SpeciesReference
,
SpeciesReferenceGlyph
,
SpeciesType
,
StoichiometryMath
,
Submodel
,
TextGlyph
,
Transition
,
Trigger
,
Unit
,
UnitDefinition
getElementNamespace() :
SBasePlugin
getEmail() :
ModelCreator
getEncoding() :
XMLInputStream
getEnd() :
LineSegment
getError() :
SBMLDocument
,
SBMLErrorLog
,
XMLErrorLog
getErrorId() :
XMLError
getErrorIdOffset() :
XMLError
getErrorLog() :
SBMLDocument
,
SBMLValidator
,
XMLInputStream
getErrorWithSeverity() :
SBMLDocument
,
SBMLErrorLog
getEvent() :
Model
getEventAssignment() :
Event
getExponent() :
ASTNode
,
Unit
getExponentAsDouble() :
Unit
getExtendedType() :
ASTNode
getExtension() :
SBMLExtensionRegistry
getExtentConversionFactor() :
Submodel
getExtentUnits() :
Model
getExternalModelDefinition() :
CompSBMLDocumentPlugin
getFailure() :
SBMLValidator
getFailures() :
SBMLValidator
,
Validator
getFamilyName() :
ModelCreator
getFast() :
Reaction
getFloatValue() :
ConversionOption
,
ConversionProperties
getFluxBound() :
FbcModelPlugin
getFluxBoundOperation() :
FluxBound
getFluxBoundsForReaction() :
FbcModelPlugin
getFluxObjective() :
Objective
getFormula() :
KineticLaw
,
Rule
getFunctionDefinition() :
Model
getFunctionTerm() :
Transition
getGeneAssociation() :
FbcModelPlugin
getGeneProduct() :
FbcModelPlugin
,
GeneProductRef
getGeneProductAssociation() :
FbcReactionPlugin
getGeneProductByLabel() :
FbcModelPlugin
getGeneralGlyph() :
Layout
getGivenName() :
ModelCreator
getGlyphId() :
ReferenceGlyph
getGraphicalObjectId() :
TextGlyph
getHasOnlySubstanceUnits() :
Species
getHeight() :
Dimensions
getHost() :
SBMLUri
getHour() :
Date
getHoursOffset() :
Date
getId() :
ASTNode
,
BoundingBox
,
Compartment
,
CompartmentType
,
Deletion
,
Dimensions
,
Event
,
ExternalModelDefinition
,
FluxBound
,
FluxObjective
,
FunctionDefinition
,
GeneAssociation
,
GeneProduct
,
GeneProductAssociation
,
GeneProductRef
,
GraphicalObject
,
Input
,
Layout
,
Model
,
Objective
,
Output
,
Parameter
,
Point
,
Port
,
QualitativeSpecies
,
Reaction
,
SimpleSpeciesReference
,
Species
,
SpeciesType
,
Submodel
,
Transition
,
UnitDefinition
,
VConstraint
getIdRef() :
SBaseRef
getIndex() :
XMLAttributes
,
XMLNamespaces
,
XMLNode
getIndexByPrefix() :
XMLNamespaces
getIndexForReferenceGlyph() :
GeneralGlyph
getIndexForSpeciesReferenceGlyph() :
ReactionGlyph
getIndexForSubGlyph() :
GeneralGlyph
getInitialAmount() :
Species
getInitialAssignment() :
Model
getInitialAssignmentBySymbol() :
Model
getInitialConcentration() :
Species
getInitialLevel() :
QualitativeSpecies
getInitialValue() :
Trigger
getInput() :
Transition
getInputBySpecies() :
Transition
getInstance() :
SBMLConverterRegistry
,
SBMLExtensionRegistry
,
SBMLResolverRegistry
getInstantiation() :
Submodel
getInteger() :
ASTNode
getIntValue() :
ConversionOption
,
ConversionProperties
getItemTypeCode() :
ListOf
,
ListOfCompartmentGlyphs
,
ListOfCompartments
,
ListOfCompartmentTypes
,
ListOfConstraints
,
ListOfDeletions
,
ListOfEventAssignments
,
ListOfEvents
,
ListOfExternalModelDefinitions
,
ListOfFbcAssociations
,
ListOfFluxBounds
,
ListOfFluxObjectives
,
ListOfFunctionDefinitions
,
ListOfFunctionTerms
,
ListOfGeneAssociations
,
ListOfGeneProducts
,
ListOfGraphicalObjects
,
ListOfInitialAssignments
,
ListOfInputs
,
ListOfLayouts
,
ListOfLineSegments
,
ListOfLocalParameters
,
ListOfModelDefinitions
,
ListOfObjectives
,
ListOfOutputs
,
ListOfParameters
,
ListOfPorts
,
ListOfQualitativeSpecies
,
ListOfReactionGlyphs
,
ListOfReactions
,
ListOfReferenceGlyphs
,
ListOfReplacedElements
,
ListOfRules
,
ListOfSpecies
,
ListOfSpeciesGlyphs
,
ListOfSpeciesReferenceGlyphs
,
ListOfSpeciesReferences
,
ListOfSpeciesTypes
,
ListOfSubmodels
,
ListOfTextGlyphs
,
ListOfTransitions
,
ListOfUnitDefinitions
,
ListOfUnits
getKey() :
ConversionOption
getKind() :
Unit
getKineticLaw() :
Reaction
getL1TypeCode() :
Rule
getLabel() :
GeneProduct
getLayout() :
LayoutModelPlugin
getLeftChild() :
ASTNode
getLength() :
XMLAttributes
,
XMLNamespaces
getLengthUnits() :
Model
getLevel() :
CompExtension
,
FbcExtension
,
LayoutExtension
,
QualExtension
,
SBase
,
SBasePlugin
,
SBMLExtension
,
SBMLNamespaces
getLine() :
SBase
,
XMLError
,
XMLToken
getListCreators() :
ModelHistory
getListModifiedDates() :
ModelHistory
getListNestedCVTerms() :
CVTerm
getListOfAdditionalGraphicalObjects() :
Layout
getListOfAssociations() :
FbcAnd
,
FbcOr
getListOfCompartmentGlyphs() :
Layout
getListOfCompartments() :
Model
getListOfCompartmentTypes() :
Model
getListOfConstraints() :
Model
getListOfCurveSegments() :
Curve
getListOfDeletions() :
Submodel
getListOfEventAssignments() :
Event
getListOfEvents() :
Model
getListOfExternalModelDefinitions() :
CompSBMLDocumentPlugin
getListOfFluxBounds() :
FbcModelPlugin
getListOfFluxObjectives() :
Objective
getListOfFunctionDefinitions() :
Model
getListOfFunctionTerms() :
Transition
getListOfGeneAssociations() :
FbcModelPlugin
getListOfGeneProducts() :
FbcModelPlugin
getListOfInitialAssignments() :
Model
getListOfInputs() :
Transition
getListOfLayouts() :
LayoutModelPlugin
getListOfLocalParameters() :
KineticLaw
getListOfModelDefinitions() :
CompSBMLDocumentPlugin
getListOfModifiers() :
Reaction
getListOfNodes() :
ASTNode
getListOfObjectives() :
FbcModelPlugin
getListOfOutputs() :
Transition
getListOfParameters() :
KineticLaw
,
Model
getListOfPorts() :
CompModelPlugin
getListOfProducts() :
Reaction
getListOfQualitativeSpecies() :
QualModelPlugin
getListOfReactants() :
Reaction
getListOfReactionGlyphs() :
Layout
getListOfReactions() :
Model
getListOfReferenceGlyphs() :
GeneralGlyph
getListOfReplacedElements() :
CompSBasePlugin
getListOfRules() :
Model
getListOfSpecies() :
Model
getListOfSpeciesGlyphs() :
Layout
getListOfSpeciesReferenceGlyphs() :
ReactionGlyph
getListOfSpeciesTypes() :
Model
getListOfSubGlyphs() :
GeneralGlyph
getListOfSubmodels() :
CompModelPlugin
getListOfTextGlyphs() :
Layout
getListOfTransitions() :
QualModelPlugin
getListOfUnitDefinitions() :
Model
getListOfUnits() :
UnitDefinition
getLocalParameter() :
KineticLaw
getLocationURI() :
SBMLDocument
getLowerFluxBound() :
FbcReactionPlugin
getMantissa() :
ASTNode
getMath() :
Constraint
,
Delay
,
EventAssignment
,
FunctionDefinition
,
FunctionTerm
,
InitialAssignment
,
KineticLaw
,
Priority
,
Rule
,
StoichiometryMath
,
Trigger
getMaxLevel() :
QualitativeSpecies
getMd5() :
ExternalModelDefinition
getMessage() :
Constraint
,
XMLError
getMessageString() :
Constraint
getMetaId() :
SBase
getMetaIdRef() :
GraphicalObject
,
SBaseRef
getMinute() :
Date
getMinutesOffset() :
Date
getModel() :
CompSBMLDocumentPlugin
,
L3ParserSettings
,
SBase
,
SBMLDocument
,
SBMLValidator
getModelDefinition() :
CompSBMLDocumentPlugin
getModelHistory() :
SBase
getModelQualifierType() :
CVTerm
getModelRef() :
ExternalModelDefinition
,
Submodel
getModifiedDate() :
ModelHistory
getModifier() :
Reaction
getModifierSpeciesReference() :
Model
getMonth() :
Date
getMultiplier() :
Unit
getName() :
ASTNode
,
Compartment
,
CompartmentType
,
CompExtension
,
Deletion
,
Event
,
ExternalModelDefinition
,
FbcExtension
,
FluxBound
,
FluxObjective
,
FunctionDefinition
,
GeneProduct
,
GeneProductAssociation
,
GeneProductRef
,
Input
,
Layout
,
LayoutExtension
,
Model
,
Objective
,
Output
,
Parameter
,
Port
,
QualExtension
,
QualitativeSpecies
,
Reaction
,
SBMLConverter
,
SBMLExtension
,
SimpleSpeciesReference
,
Species
,
SpeciesType
,
Submodel
,
Transition
,
UnitDefinition
,
XMLAttributes
,
XMLToken
,
XMLTriple
getNamespaceIndex() :
XMLToken
getNamespaceIndexByPrefix() :
XMLToken
getNamespacePrefix() :
XMLToken
getNamespaces() :
SBase
,
SBMLDocument
,
SBMLNamespaces
,
XMLToken
getNamespacesLength() :
XMLToken
getNamespaceURI() :
XMLToken
getNestedCVTerm() :
CVTerm
getNotes() :
SBase
getNotesString() :
SBase
getNumAdditionalGraphicalObjects() :
Layout
getNumArguments() :
FunctionDefinition
getNumAssociations() :
Association
,
FbcAnd
,
FbcOr
getNumAttributes() :
XMLAttributes
getNumChildren() :
ASTNode
,
XMLNode
getNumCompartmentGlyphs() :
Layout
getNumCompartments() :
Model
getNumCompartmentTypes() :
Model
getNumConstraints() :
Model
getNumConverters() :
SBMLConverterRegistry
getNumCreators() :
ModelHistory
getNumCurveSegments() :
Curve
getNumCVTerms() :
SBase
getNumDeletions() :
Submodel
getNumDisabledPlugins() :
SBase
getNumerator() :
ASTNode
getNumErrors() :
SBMLDocument
,
XMLErrorLog
getNumEventAssignments() :
Event
getNumEvents() :
Model
getNumExtension() :
SBMLExtensionRegistry
getNumExternalModelDefinitions() :
CompSBMLDocumentPlugin
getNumFailsWithSeverity() :
SBMLErrorLog
getNumFailures() :
SBMLValidator
getNumFbcAssociations() :
ListOfFbcAssociations
getNumFluxBounds() :
FbcModelPlugin
getNumFluxObjectives() :
ListOfFluxObjectives
,
Objective
getNumFunctionDefinitions() :
Model
getNumFunctionTerms() :
Transition
getNumGeneAssociations() :
FbcModelPlugin
getNumGeneProducts() :
FbcModelPlugin
,
ListOfGeneProducts
getNumGeneralGlyphs() :
Layout
getNumInitialAssignments() :
Model
getNumInputs() :
Transition
getNumLayouts() :
LayoutModelPlugin
getNumLocalParameters() :
KineticLaw
getNumModelDefinitions() :
CompSBMLDocumentPlugin
getNumModifiedDates() :
ModelHistory
getNumModifiers() :
Reaction
getNumNamespaces() :
XMLNamespaces
getNumNestedCVTerms() :
CVTerm
getNumObjectives() :
FbcModelPlugin
,
ListOfObjectives
getNumOfSBasePlugins() :
SBMLExtension
getNumOfSupportedPackageURI() :
SBasePluginCreatorBase
,
SBMLExtension
getNumOptions() :
ConversionProperties
getNumOutputs() :
Transition
getNumParameters() :
KineticLaw
,
Model
getNumPlugins() :
SBase
getNumPorts() :
CompModelPlugin
getNumProducts() :
Reaction
getNumQualitativeSpecies() :
QualModelPlugin
getNumReactants() :
Reaction
getNumReactionGlyphs() :
Layout
getNumReactions() :
Model
getNumReferenceGlyphs() :
GeneralGlyph
getNumReferents() :
ReplacedElement
,
SBaseRef
getNumRegisteredPackages() :
SBMLExtensionRegistry
getNumReplacedElements() :
CompSBasePlugin
getNumResolvers() :
SBMLResolverRegistry
getNumResources() :
CVTerm
getNumRules() :
Model
getNumSemanticsAnnotations() :
ASTNode
getNumSpecies() :
Model
getNumSpeciesGlyphs() :
Layout
getNumSpeciesReferenceGlyphs() :
ReactionGlyph
getNumSpeciesTypes() :
Model
getNumSpeciesWithBoundaryCondition() :
Model
getNumSubGlyphs() :
GeneralGlyph
getNumSubmodels() :
CompModelPlugin
getNumTextGlyphs() :
Layout
getNumTransitions() :
QualModelPlugin
getNumUnitDefinitions() :
Model
getNumUnits() :
UnitDefinition
getObjective() :
FbcModelPlugin
getObjectiveType() :
Objective
getOffset() :
Unit
getOperation() :
FluxBound
getOperatorName() :
ASTNode
getOption() :
ConversionProperties
getOrder() :
CompartmentGlyph
getOrganisation() :
ModelCreator
getOrganization() :
ModelCreator
getOriginOfTextId() :
TextGlyph
getOutput() :
Transition
getOutputBySpecies() :
Transition
getOutputLevel() :
Output
getOutside() :
Compartment
getPackage() :
XMLError
getPackageName() :
CompExtension
,
FbcExtension
,
LayoutExtension
,
QualExtension
,
SBase
,
SBaseExtensionPoint
,
SBasePlugin
,
SBMLExtensionNamespaces< SBMLExtensionType >
,
SBMLNamespaces
getPackageRequired() :
SBMLDocument
getPackageToStrip() :
SBMLStripPackageConverter
getPackageVersion() :
CompExtension
,
FbcExtension
,
LayoutExtension
,
QualExtension
,
SBase
,
SBasePlugin
,
SBMLExtension
,
SBMLExtensionNamespaces< SBMLExtensionType >
getParameter() :
KineticLaw
,
Model
getParentSBMLObject() :
ASTNode
,
SBase
,
SBasePlugin
getParseAvogadroCsymbol() :
L3ParserSettings
getParseCollapseMinus() :
L3ParserSettings
getParseLog() :
L3ParserSettings
getParseUnits() :
L3ParserSettings
getPath() :
SBMLUri
getPersistent() :
Trigger
getPkgRequired() :
SBMLDocument
getPlugin() :
SBase
getPort() :
CompModelPlugin
getPortRef() :
SBaseRef
getPosition() :
BoundingBox
getPositionExplicitlySet() :
BoundingBox
getPrecedence() :
ASTNode
getPrefix() :
SBase
,
SBasePlugin
,
XMLAttributes
,
XMLNamespaces
,
XMLToken
,
XMLTriple
getPrefixedName() :
XMLAttributes
,
XMLTriple
getPriority() :
Event
getProduct() :
Reaction
getProperties() :
SBMLConverter
getQualifierType() :
CVTerm
getQualitativeSpecies() :
Input
,
Output
,
QualModelPlugin
getQuery() :
SBMLUri
getRateRule() :
Model
getRateRuleByVariable() :
Model
getReactant() :
Reaction
getReaction() :
FluxBound
,
FluxObjective
,
GeneAssociation
,
Model
getReactionGlyph() :
Layout
getReactionId() :
ReactionGlyph
getReal() :
ASTNode
getReference() :
Association
getReferencedElement() :
SBaseRef
getReferencedElementFrom() :
ReplacedElement
,
SBaseRef
getReferencedModel() :
ExternalModelDefinition
getReferenceGlyph() :
GeneralGlyph
getReferenceId() :
GeneralGlyph
,
ReferenceGlyph
getRegisteredPackageName() :
SBMLExtensionRegistry
getRegisteredPackageNames() :
SBMLExtensionRegistry
getReplacedBy() :
CompSBasePlugin
getReplacedElement() :
CompSBasePlugin
getRequired() :
SBMLDocumentPlugin
getResolverByIndex() :
SBMLResolverRegistry
getResourceBiologicalQualifier() :
SBase
getResourceModelQualifier() :
SBase
getResources() :
CVTerm
getResourceURI() :
CVTerm
getResultLevel() :
DefaultTerm
,
FunctionTerm
getReversible() :
Reaction
getRightChild() :
ASTNode
getRole() :
ReferenceGlyph
,
SpeciesReferenceGlyph
getRoleString() :
SpeciesReferenceGlyph
getRule() :
Model
getRuleByVariable() :
Model
getSBaseRef() :
SBaseRef
getSBMLDocument() :
SBase
,
SBasePlugin
getSBMLErrMsg() :
SBMLConstructorException
getSBMLExtensionNamespaces() :
CompExtension
,
FbcExtension
,
LayoutExtension
,
QualExtension
,
SBMLExtension
getSBMLNamespaces() :
XMLInputStream
,
XMLOutputStream
getSBMLNamespaceURI() :
SBMLNamespaces
getSBOTerm() :
SBase
getSBOTermAsURL() :
SBase
getSBOTermID() :
SBase
getScale() :
Unit
getScheme() :
SBMLUri
getSecond() :
Date
getSemanticsAnnotation() :
ASTNode
getSeverity() :
VConstraint
,
XMLError
getSeverityAsString() :
XMLError
getSeverityOverride() :
XMLErrorLog
getShortMessage() :
XMLError
getSign() :
Input
getSignOffset() :
Date
getSize() :
Compartment
,
List
getSource() :
ExternalModelDefinition
getSpatialDimensions() :
Compartment
getSpatialDimensionsAsDouble() :
Compartment
getSpatialSizeUnits() :
Species
getSpecies() :
Model
,
SimpleSpeciesReference
getSpeciesGlyph() :
Layout
getSpeciesGlyphId() :
SpeciesReferenceGlyph
getSpeciesId() :
SpeciesGlyph
getSpeciesReference() :
Model
getSpeciesReferenceGlyph() :
ReactionGlyph
getSpeciesReferenceId() :
SpeciesReferenceGlyph
getSpeciesType() :
Model
,
Species
getStandardMessage() :
XMLError
getStart() :
LineSegment
getStoichiometry() :
SpeciesReference
getStoichiometryMath() :
SpeciesReference
getStrict() :
FbcModelPlugin
,
FbcV1ToV2Converter
getStringFromTypeCode() :
CompExtension
,
FbcExtension
,
LayoutExtension
,
QualExtension
,
SBMLExtension
getStyle() :
ASTNode
getSubGlyph() :
GeneralGlyph
getSubmodel() :
CompModelPlugin
getSubmodelRef() :
Replacing
getSubstanceConversionFactor() :
Submodel
getSubstanceUnits() :
KineticLaw
,
Model
,
Species
getSupportedNamespaces() :
SBMLNamespaces
getSupportedPackageURI() :
SBasePluginCreatorBase
,
SBMLExtension
getSymbol() :
InitialAssignment
getTargetExtensionPoint() :
SBasePluginCreatorBase
getTargetLevel() :
SBMLLevelVersionConverter
getTargetNamespaces() :
ConversionProperties
,
SBMLConverter
getTargetPackageName() :
SBasePluginCreatorBase
getTargetSBMLTypeCode() :
SBasePluginCreatorBase
getTargetVersion() :
SBMLLevelVersionConverter
getText() :
TextGlyph
getTextGlyph() :
Layout
getThresholdLevel() :
Input
getTimeConversionFactor() :
Submodel
getTimeUnits() :
Event
,
KineticLaw
,
Model
getTransformer() :
CompModelPlugin
getTransition() :
QualModelPlugin
getTransitionEffect() :
Input
,
Output
getTrigger() :
Event
getType() :
Association
,
ASTNode
,
ConversionOption
,
ConversionProperties
,
Objective
,
Rule
getTypeCode() :
Association
,
BoundingBox
,
Compartment
,
CompartmentGlyph
,
CompartmentType
,
Constraint
,
CubicBezier
,
Curve
,
DefaultTerm
,
Delay
,
Deletion
,
Dimensions
,
Event
,
EventAssignment
,
ExternalModelDefinition
,
FbcAnd
,
FbcAssociation
,
FbcOr
,
FluxBound
,
FluxObjective
,
FunctionDefinition
,
FunctionTerm
,
GeneAssociation
,
GeneProduct
,
GeneProductAssociation
,
GeneProductRef
,
GeneralGlyph
,
GraphicalObject
,
InitialAssignment
,
Input
,
KineticLaw
,
Layout
,
LineSegment
,
ListOf
,
ListOfFbcAssociations
,
ListOfFluxObjectives
,
ListOfGeneProducts
,
ListOfObjectives
,
LocalParameter
,
Model
,
ModelDefinition
,
ModifierSpeciesReference
,
Objective
,
Output
,
Parameter
,
Point
,
Port
,
Priority
,
QualitativeSpecies
,
Reaction
,
ReactionGlyph
,
ReferenceGlyph
,
ReplacedBy
,
ReplacedElement
,
Rule
,
SBase
,
SBaseExtensionPoint
,
SBaseRef
,
SBMLDocument
,
Species
,
SpeciesGlyph
,
SpeciesReference
,
SpeciesReferenceGlyph
,
SpeciesType
,
StoichiometryMath
,
Submodel
,
TextGlyph
,
Transition
,
Trigger
,
Unit
,
UnitDefinition
getUnit() :
UnitDefinition
getUnitDefinition() :
Model
getUnitRef() :
SBaseRef
getUnits() :
ASTNode
,
Compartment
,
Parameter
,
Rule
,
Species
getUpperFluxBound() :
FbcReactionPlugin
getURI() :
CompExtension
,
FbcExtension
,
LayoutExtension
,
QualExtension
,
SBase
,
SBasePlugin
,
SBMLExtension
,
SBMLExtensionNamespaces< SBMLExtensionType >
,
SBMLNamespaces
getUri() :
SBMLUri
getURI() :
XMLAttributes
,
XMLNamespaces
,
XMLToken
,
XMLTriple
getUserData() :
ASTNode
,
ElementFilter
,
SBase
getUseValuesFromTriggerTime() :
Event
getValidityFlag() :
SBMLLevelVersionConverter
getValue() :
ASTNode
,
ConversionOption
,
ConversionProperties
,
FluxBound
,
Parameter
,
XMLAttributes
getVariable() :
EventAssignment
,
Rule
getVersion() :
CompExtension
,
FbcExtension
,
LayoutExtension
,
QualExtension
,
SBase
,
SBasePlugin
,
SBMLExtension
,
SBMLNamespaces
,
XMLInputStream
getVolume() :
Compartment
getVolumeUnits() :
Model
getWidth() :
Dimensions
getXmlnsL2() :
LayoutExtension
getXmlnsL3V1V1() :
CompExtension
,
FbcExtension
,
LayoutExtension
,
QualExtension
getXmlnsL3V1V2() :
FbcExtension
getXmlnsXSI() :
LayoutExtension
getXOffset() :
Point
getYear() :
Date
getYOffset() :
Point
getZOffset() :
Point
getZOffsetExplicitlySet() :
Point
GraphicalObject() :
GraphicalObject
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